rs243789799 SNP Detail

Summary

• ID
  rs243789799
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184545248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCTACTT CATACCTGTA
  ATAGTGCTAC TGTTAGGAAT CGTATCGTAA ATACCTGATA GGCAGGATAT CTGATATGTG
  GCCCCTGTGG AAGGATCGTG ACCCACAGGT TGAGAAGTGC CCTGTACACA CCAGTGACCA
  ATTAAGGCTT AGAACCCAGG GAAGACACGT GGTGATCTTG TAAAATGAGT AAGAAGCAAA
  W
  GTCACAGAGG AAGTAGGAGA GACTCGCACT TATTAATGAC AATGGAACCA CACAGCTGTA
  AGAGAGCTAA CTCGGCTCCA TGTTAACTTA GTGTTTGTAC TGTTACTGCA AGCTAGTGCA
  TCATCCTGTG CTACCGTGAG CCTTTAAGAC TGAGTTCATG GTTTCTCCTT GTTCCTTCTT
  CCGAAGGAAG ATTCCATTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169583	CHEV_1_186636930	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243789799					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184545248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	1714 bp distal
Gm70890	predicted gene, 70890	189 bp downstream
Mtarc1	mitochondrial amidoxime reducing component 1	1854 bp upstream
Mtarc2	mitochondrial amidoxime reducing component 2	17 bp downstream
Rr425290	regulatory region 425290	1117 bp distal
Rr425291	regulatory region 425291	611 bp distal
Rr425292	regulatory region 425292	682 bp distal
Rr425293	regulatory region 425293	534 bp distal
Rr425294	regulatory region 425294	1394 bp proximal
Tssr15651	transcription start site region 15651	1888 bp upstream
Tssr15652	transcription start site region 15652	1848 bp upstream
Tssr15653	transcription start site region 15653	1787 bp upstream
Tssr15654	transcription start site region 15654	1748 bp upstream
Tssr15655	transcription start site region 15655	1737 bp upstream