rs243793352 SNP Detail

Summary

• ID
  rs243793352
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:3674137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCACTG AAAGCTCCCA
  GGGCAGGAGA TTGACTTCTG GCCTCCACCT GCGTGTGCAC ACGTGTGCCC GGAGCTCTAA
  ACATGTATGC TAATGTACAC AGACATAGGG CTGGGGCTGG AGCTCAGTTG ATAGAGACTG
  CATCAAAGCC CTGGGTTCTA TCCCTACCCA CATACATCAC TCATGGTGAC TCACACCTGT
  K
  ATCCCAGAAC CCAGGATGCA CATGTAGGAG AACATGCCAG CCAGAGCTAC ATGAAACCCT
  GTCTCAAAAA CAATAAAGCA AAACACTCCC AAACAGAAGC CCTACTCTTC ATTGATTTAT
  AGGGGTATGC ATTCATATGC CTTCCAGGAA AACTGCCTGT TTTCTCCCTG TGGCCTCTCC
  CAAATATACA GATGTTGGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373511991	MGP_WTSI_8_3624137	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243793352					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373511991	MGP_WTSI_8_3624137	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3674137 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pcp2	Purkinje cell protein 2 (L7)			Intron
				mRNA-UTR
Pet100	PET100 homolog			Intron
				mRNA-UTR
Rr658951	regulatory region 658951			1127 bp distal
Tssr80203	transcription start site region 80203			580 bp upstream
Tssr80204	transcription start site region 80204			432 bp downstream
Tssr80205	transcription start site region 80205			522 bp downstream
Tssr80206	transcription start site region 80206			784 bp downstream
Tssr80207	transcription start site region 80207			833 bp downstream
Tssr80208	transcription start site region 80208			852 bp downstream
Tssr80209	transcription start site region 80209			888 bp downstream
Tssr80210	transcription start site region 80210			1069 bp downstream
Tssr80211	transcription start site region 80211			1109 bp downstream
Tssr80212	transcription start site region 80212			1137 bp downstream
Tssr80213	transcription start site region 80213			1152 bp downstream
Tssr80214	transcription start site region 80214			1404 bp downstream
Tssr80215	transcription start site region 80215			1441 bp downstream