rs243793794 SNP Detail

Summary

• ID
  rs243793794
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35874117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGGTATC AGGGATCCAA
  CACAGATCCT TAGGCTTAGC CACAAGCATC TCTTCCCTGC TAGCCATCTG GCCAGCTCTT
  TATTCTTTTT TTTTACATGA GGGTGATCTG AGCCCAGAGA GGTACAGTAA CTTTACCCAA
  GTCGGTGAGG TTGTAAAGCC TGAGCCCTGA GGCTCAGAAG CTCAGAAGCC AGTTGGCTCC
  R
  TGCCTTGTTT TTAGGAGCAG ATGGAAGATG CCATGGTTCA TGTAGTTTCC CTGGCACAGG
  AGAAGCTAGC TGCTGAGGCC CGGGACAGGA GCAGTTCGTC CCTTCCAGGC AAGAACCTGA
  ATCCTCCCCG TATCACAAGC AGAGACAGGA GAACACCGGC ATTCAGAGGC TCCCCTGAAC
  TCCCAGGAAT ATTCTGGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400264704	MGP_WTSI_18_35900718	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243793794					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400264704	MGP_WTSI_18_35900718	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35874117 () rs orientation: forward

Symbol	Name	Function Class
Sting1	stimulator of interferon response cGAMP interactor 1	510 bp upstream
Tssr150550	transcription start site region 150550	352 bp downstream
Tssr152909	transcription start site region 152909	1043 bp upstream
Tssr152910	transcription start site region 152910	1029 bp upstream
Tssr152911	transcription start site region 152911	990 bp upstream
Tssr152912	transcription start site region 152912	936 bp upstream
Tssr152913	transcription start site region 152913	824 bp upstream
Tssr152914	transcription start site region 152914	626 bp upstream
Tssr152915	transcription start site region 152915	572 bp upstream
Tssr152916	transcription start site region 152916	522 bp upstream