rs243798761 SNP Detail

Summary

• ID
  rs243798761
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:55065676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAC ACCGAGACAC ACACTTAGAA
  T
  GGACGGGTTT AGTGACTTAG TGTCA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319727214	CHEV_1_55083361	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243798761					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55065676 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi259	CpG island 259			303 bp proximal
Gm71172	predicted gene, 71172			537 bp upstream
Rr371303	regulatory region 371303			within coordinates
Rr411122	regulatory region 411122			673 bp distal
Rr411123	regulatory region 411123			47 bp proximal
Rr411124	regulatory region 411124			548 bp proximal
Rr411125	regulatory region 411125			954 bp proximal
Rr411126	regulatory region 411126			1001 bp proximal
Sf3b1	splicing factor 3b, subunit 1			Intron
				Noncoding-Transcript-Variant
Tssr6707	transcription start site region 6707			141 bp downstream
Tssr6708	transcription start site region 6708			1080 bp upstream
Tssr11708	transcription start site region 11708			860 bp downstream
Tssr11709	transcription start site region 11709			956 bp downstream