rs243800559 SNP Detail

Summary

• ID
  rs243800559
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:57953241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACT AAGACAAATT AAGAATATTA
  G
  ATCTGGTCCA ACAAAGGAAA GTAAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321136090	CHEV_4_57966113	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243800559					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:57953241 () rs orientation: forward

Symbol	Name	Function Class
Gm57068	predicted gene, 57068	1943 bp upstream
Rr592846	regulatory region 592846	64 bp distal
Rr592847	regulatory region 592847	610 bp proximal
Rr592848	regulatory region 592848	958 bp proximal
Tssr41863	transcription start site region 41863	1381 bp upstream
Tssr41864	transcription start site region 41864	1347 bp upstream
Tssr41865	transcription start site region 41865	279 bp downstream
Txn1	thioredoxin 1	Intron