rs243801005 SNP Detail

Summary

• ID
  rs243801005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:29411050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGCACA AATCCCTACA
  GCGAATCTAG GAAAGAAAGA AAGATTTCCA GATCCTGATT TACAGGGGGG GGGGGGGGGG
  GGGGGGGGCA GACTAGCACC GGGTGCACCG ACTCCAGTAC TGGTTTGTGT ACTGGAGTAG
  AAGAGCCAGT GCCCCGAGTT GCTATCTCCT GTGGGAGGCA TAGGGTGTAG GTTGAAAAGA
  Y
  TGTTTCCTCC AGCAGCTGGG TCTGGGCAGG CAAAACCAGC TGACAGGTGA ATGTGGTGGA
  AGGGAGCAAA GACATAACGC AAAGCAAAAC CAAAACAACA ACAACAAAAA CAAACAACAA
  CAATACCCCC TCCTCTCCCA CTCCCCCCCC CAAAAAAAAA GAAAACCCCA AACTTACTTC
  TTCGCTGGCG CCTTCCTCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379871020	MGP_WTSI_10_29254860	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243801005					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379871020	MGP_WTSI_10_29254860	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:29411050 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1415	CpG island 1415	1321 bp distal
Cpgi1416	CpG island 1416	281 bp distal
Cpgi1417	CpG island 1417	368 bp proximal
Gm48159	predicted gene, 48159	within coordinates
Rr429491	regulatory region 429491	1828 bp distal
Rr429493	regulatory region 429493	1899 bp distal
Rr429494	regulatory region 429494	327 bp distal
Rr429495	regulatory region 429495	within coordinates
Rr429496	regulatory region 429496	803 bp proximal
Rspo3	R-spondin 3	Intron
Tssr92878	transcription start site region 92878	67 bp upstream
Tssr97164	transcription start site region 97164	733 bp downstream
Tssr97165	transcription start site region 97165	753 bp downstream
Tssr97166	transcription start site region 97166	803 bp downstream