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rs243813397 SNP Detail
Summary
  • ID
    rs243813397
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:138231519 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCTCAATTAT GTGTTAGTCA
    ACCCAAGCAT CCATTATGTA CTCAATAATA GCTATGACAC AGCTCTGGAC AACAGCAATG
    CCATGGAGAG GCAGACACGA GATAGCCTGC TTACACTGCT TTTCCTGGCG GTAACATTTT
    TAAGCTGCGT GGAAGCCATG AGATCCTGGC TCCCTCATTA GGAACTTTAC CCAACAGTGC
    Y
    TTGACGGCCT GGTAACTTAG AAGAAAATGT AGCATGCCAG TTCTGTTTGT TAGTTGTTAT
    GAACATAAGT TCATGAACAC GAAGTTTCTG TTGAGAGCAG CTACATTCCC TTTAAAACTG
    CATCGGTGTA CGCAACAAAG TAAAGAAAAG AAAATTTTAA GACACTGTTA AGGCTTGGGG
    ATATAGCTCA GTTGGTAGAG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss359912451 MGP_WTSI_3_138188722 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243813397 SNP T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss359912451 MGP_WTSI_3_138188722 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:138231519 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi13876 CpG island 13876 446 bp proximal
Eif4e eukaryotic translation initiation factor 4E 433 bp upstream
Gm64814 predicted gene, 64814 within coordinates
Mir1956 microRNA 1956 663 bp upstream
Rr398072 regulatory region 398072 1170 bp upstream
Rr586156 regulatory region 586156 133 bp proximal
Rr586157 regulatory region 586157 480 bp proximal
Rr586158 regulatory region 586158 1037 bp proximal
Rr586159 regulatory region 586159 1146 bp proximal
Rr586160 regulatory region 586160 1549 bp proximal
Rr586161 regulatory region 586161 1886 bp proximal
Tssr31989 transcription start site region 31989 416 bp upstream
Tssr31990 transcription start site region 31990 660 bp upstream
Tssr31991 transcription start site region 31991 680 bp upstream
Tssr31992 transcription start site region 31992 717 bp upstream
Tssr31993 transcription start site region 31993 765 bp upstream
Tssr31994 transcription start site region 31994 804 bp upstream
Tssr31995 transcription start site region 31995 862 bp upstream
Tssr31996 transcription start site region 31996 1486 bp upstream
Tssr35898 transcription start site region 35898 469 bp downstream
Tssr35899 transcription start site region 35899 1185 bp downstream
Tssr35900 transcription start site region 35900 1209 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory