rs243818979 SNP Detail

Summary

• ID
  rs243818979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57018442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACATGGC AGGTGCCTCT
  CCTTCATTTC TGGTGGCTTG GCTCTTGAGG TCACAGATGA AGCTACACGT GGGCTGAGCT
  GACTTGATGC TCCTATGGGT GGTGCCCGGC CCCCACGGGG GTTCACTAGG TTTGGGCCTG
  AGAACACCTG TCTGGACAAA GGTGATGAAA CCAAGAGAGC TCCTGCCTTC TTGCCTGCCT
  R
  CGTGAACCAC CTGGGTCTCC CTTAGCAGGT ACCCAGCCCT GAGGTGACTG ACCACCTAGG
  GCCCCTGAGA GGCAAAGGGA ACCTGCAAAG GGCCTGTCCC CGGGCAGAAG ATGAAGCCCC
  TACCCGTGGA CTGTGTGGTT CCATCTCTGG CCAGGCCACT TCCAGCCAGC AAGGACACCA
  GAGGCTGCCT TAGCAGATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398562799	MGP_WTSI_17_56850865	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243818979					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398562799	MGP_WTSI_17_56850865	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57018442 () rs orientation: forward

Symbol	Name	Function Class
Ccpn-ps	calcyphosine, pseudogene	609 bp downstream
Ranbp3	RAN binding protein 3	within coordinates
Rr392775	regulatory region 392775	188 bp downstream
Tssr145329	transcription start site region 145329	1508 bp downstream
Tssr145330	transcription start site region 145330	1467 bp downstream
Tssr145331	transcription start site region 145331	1450 bp downstream
Tssr145332	transcription start site region 145332	1425 bp downstream
Tssr145333	transcription start site region 145333	1403 bp downstream
Tssr145334	transcription start site region 145334	1371 bp downstream
Tssr145335	transcription start site region 145335	488 bp downstream
Tssr148830	transcription start site region 148830	1553 bp upstream