rs243838826 SNP Detail

Summary

• ID
  rs243838826
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142200666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACT GCCTGACCTG GAATAGCTGC
  Y
  GCAAAGGCAG CATAGAAAGA CAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321002330	CHEV_3_142157869	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243838826					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142200666 () rs orientation: forward

Symbol	Name	Function Class
Rr398083	regulatory region 398083	1154 bp downstream
Rr398084	regulatory region 398084	1595 bp upstream
Rr586444	regulatory region 586444	657 bp distal
Rr586445	regulatory region 586445	1263 bp distal
Rr586446	regulatory region 586446	1505 bp proximal
Tssr32047	transcription start site region 32047	1867 bp upstream
Tssr32048	transcription start site region 32048	1886 bp upstream
Tssr32049	transcription start site region 32049	1910 bp upstream
Tssr32050	transcription start site region 32050	1968 bp upstream