rs243839069 SNP Detail

Summary

• ID
  rs243839069
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:21927118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGAGGAG GAAATCCCTA
  CAAATACATA CACACCCCAC ACACATAAAC CAAAAAAAAA AATGAATGCT AAAGTTTTCT
  TTATTCACAG GAGTAAGTAT CACTGGTCAG ATATTAAGTT TCATCACACT GAGAGCTATA
  ATCACTCCTG GATTTATCTT GTGGTTTTCA CTGCCCTGGT CATTCTCATG CAGCTGAAAT
  K
  GTTAAGTTCT TGAATTTAAT CTTCTGAGAA AATAATTTTT TGACTGGCAA GCCACTGACA
  GACAGAGTGA CAACGTTGCC ACCTCATTGC TCTATATGTC TTGTCTCCTG TCGGATTGCT
  AGGTGTTTGT GATGATTGGA AAAACAATAT CACCATAGCC CAGAGTGAAG TCTTTACCAA
  GGTCTTTCAG AAGAACATCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J
ss370763092	MGP_WTSI_7_23012712	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	G	T	G	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J
rs243839069					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	G	T	G	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370763092	MGP_WTSI_7_23012712	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:21927118 () rs orientation: forward

Symbol	Name	Function Class
Vmn1r252	vomeronasal 1 receptor 252	871 bp downstream