rs243839339 SNP Detail

Summary

• ID
  rs243839339
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147216082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACCCTGG AATTTTTTAG
  GTCTTTCCGA GTCTTGGTTT TAGATGGCTG CGTTCTCCTA ACCTTCCTAG TTCGGAGAGA
  GACTCCTGCA TCCACCTCAA TTTATTTTTG TTTTGTCTTT TCCCATCCAT ATCCTTCCTC
  TCTCTTCTTC TTCCTCTTCC ACTCCCTCCC TCCGCCTGTT CTCTCTCTCT CTTCCCTCCT
  C
  TATATTCTCA TCTCAATCCT TTCTCTTTCT GCATTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCCTCA CACACACTTT TCTCACAATC
  AAAGGTCTTT ACAGCTTCCC TAGGCTCGAC TTCTTCAATC CGCGGGTGGG GAAAACTTCA
  GTGCATTCTT CAAGGACCCA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320550000	CHEV_2_147199898	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243839339					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147216082 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12389	CpG island 12389	265 bp distal
Pax1	paired box 1	within coordinates
Tssr20631	transcription start site region 20631	299 bp downstream
Tssr20632	transcription start site region 20632	243 bp downstream
Tssr20633	transcription start site region 20633	207 bp downstream
Tssr20634	transcription start site region 20634	114 bp downstream
Tssr20635	transcription start site region 20635	1366 bp upstream