rs243839389 SNP Detail

Summary

• ID
  rs243839389
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72234278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CTTCTGGAAT TTGAGATAGG ACAGGCCTTT AATCCTCGGT GAGGATTGAG
  A
  GGTAGCATCA AAGATGGGAA GCATGCACTA CAACTTTATC TGGAAAGAAA           
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342309	CHEV_2_72241991	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243839389					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72234278 () rs orientation: forward

Symbol	Name	Function Class
Map3k20	mitogen-activated protein kinase kinase kinase 20	within coordinates
Rr50274	regulatory region 50274	678 bp distal
Rr62486	regulatory region 62486	within coordinates
Rr62487	regulatory region 62487	1524 bp proximal
Tssr18342	transcription start site region 18342	1318 bp upstream
Tssr18343	transcription start site region 18343	1404 bp upstream
Tssr18344	transcription start site region 18344	1764 bp upstream