rs243848943 SNP Detail

Summary

• ID
  rs243848943
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45568770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCACCACT GACTTCTCAA
  GCACTGGCTC ACCGCAGAGC CTCTAAGGCA CACAGCTCCA CTCTCCCTCT CCTGTGGGGG
  CCATGGAGGC TGCTCTCAGG AGAGGGCTGG GAGCCTCCAG TGGCCCGCTC CCATTCCTCG
  CCACCGTTCC CCAAGCTGGG GGAAGTGCTT ACTGGTGCAA AGCTGGCAGA GGCCGGTAGC
  R
  TAGAAGAGCC CTCCGCGCCG CATGGTGTAG AGTTGGAACA TGAAGAGGAT GAAGGACAGG
  CAGCAGAGGA TGAGAGACAG CACCATGAGG GCCTGCACTG CCTTCAGCCA GCCTACAGGG
  GGCGACACAG GTGAGGTCAC AGCTGGAACC GCTGTTCCCA CTGGCTGGAC TCTACTCACT
  GTAGGTTCAG CCAGGCAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371187817	MGP_WTSI_7_53174716	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243848943					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371187817	MGP_WTSI_7_53174716	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45568770 () rs orientation: forward

Symbol	Name	Function Class
Emp3	epithelial membrane protein 3	Coding-Synonymous
Gm72819	predicted gene, 72819	807 bp downstream
Rr400324	regulatory region 400324	1844 bp upstream
Rr646606	regulatory region 646606	1839 bp distal
Rr646607	regulatory region 646607	1358 bp distal
Rr646608	regulatory region 646608	108 bp proximal
Rr646609	regulatory region 646609	1495 bp proximal
Tmem143	transmembrane protein 143	1933 bp downstream
Tssr2256	transcription start site region 2256	1770 bp downstream
Tssr66660	transcription start site region 66660	1293 bp downstream
Tssr72489	transcription start site region 72489	within coordinates
Tssr72490	transcription start site region 72490	810 bp downstream
Tssr72491	transcription start site region 72491	1042 bp downstream
Tssr72492	transcription start site region 72492	1281 bp downstream
Tssr72493	transcription start site region 72493	1305 bp downstream
Tssr72494	transcription start site region 72494	1329 bp downstream
Tssr72495	transcription start site region 72495	1335 bp downstream
Tssr72496	transcription start site region 72496	1354 bp downstream
Tssr72497	transcription start site region 72497	1484 bp downstream
Tssr72498	transcription start site region 72498	1765 bp downstream
Tssr72499	transcription start site region 72499	1915 bp downstream