rs243854626 SNP Detail

Summary

• ID
  rs243854626
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100806228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTGTCAAT TATCCATGAC ACGTCACTGC
  CCCCTCTCCC CACAGCTGCC ATACAGTTTT GTCTGTAACA ACTCACCCCA CTGCCCTTAG
  GCCCTGAGAG AGATGGCTCT TACAGCCACC TTGAATTTGA CTGATGGCCT GGATAGATGG
  Y
  CCATCCTAAA CAGAGGTGTC TCAGTCCCCA GGAGCCCTGC CTGGCTTTGT GAGTGGCCTA
  CATGTGCCTT TGCTCTGTCC CAGGTGCTGT CATACAGACA CTGGGCTGGC AGCACAGCAG
  AGCCTCATCT TACAGTTGCC AGGGTGGTAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324138602	CHEV_12_102078179	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243854626					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100806228 () rs orientation: forward

Symbol	Name	Function Class
Dglucy	D-glutamate cyclase	within coordinates
Rr403460	regulatory region 403460	1270 bp upstream
Rr471350	regulatory region 471350	1790 bp distal
Rr471351	regulatory region 471351	250 bp distal
Rr471352	regulatory region 471352	within coordinates
Rr471353	regulatory region 471353	1434 bp proximal