rs243854648 SNP Detail

Summary

• ID
  rs243854648
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45174187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCTAAGA AAGTTTTGAC
  CCATGGTGAA TTTCTCCTTT GTTGCTGAAC TTTTGATTTT GACTTCATAT TGACTAAGGG
  ATCCTTTGAG CTGTGTGTGT ATGTGTGGTT TTGTGTGTAG TGTGGTGTGT TATGATGTTG
  CATTGTTGCA TGTTTGTGTG GTCTGTGCAT TCCTGTGTGT ATATGTGTGA ATATGTGTGT
  R
  TGTGTGATGT CTATGCAGGC CAAAGGTTGT GTGTGTGTGT GTGTGTGTGT GTGCGTGTGA
  GAGAGAGAGA GAGATGCCTT TGCACTTTTC CTTGACCTTG CATGTGCCCC ATTTCCTTTC
  TTGTGTGTGT GTGTGTGTGT ATGTGTGTGT AGGAGCAGGT GGAGCAAGGT CTCATTGTGT
  AACATTGGCT GGTCTAGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377428876	MGP_WTSI_9_45070972	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A	A	G	G	A	G	G	A	G	A	A	A	A	G	A	G	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243854648					SNP	G	G	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A	A	G	G	A	G	G	A	G	A	A	A	A	G	A	G	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377428876	MGP_WTSI_9_45070972	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45174187 () rs orientation: forward

Symbol	Name	Function Class
Gm20612	predicted gene 20612	1599 bp downstream
Il10ra	interleukin 10 receptor, alpha	within coordinates
Rr677873	regulatory region 677873	1090 bp distal
Tssr84758	transcription start site region 84758	1993 bp upstream
Tssr89253	transcription start site region 89253	within coordinates
Tssr89254	transcription start site region 89254	67 bp downstream
Tssr89255	transcription start site region 89255	157 bp downstream
Tssr89256	transcription start site region 89256	181 bp downstream
Tssr89257	transcription start site region 89257	1287 bp downstream
Tssr89258	transcription start site region 89258	1328 bp downstream
Tssr89259	transcription start site region 89259	1351 bp downstream