rs243878428 SNP Detail

Summary

• ID
  rs243878428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142133106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACCCTAA GTTATGATAC
  TGACGGACAC CTCCAATTTG GTCATAAATA GACCCCAGCC TCTATTATCT TGGCGCTGTA
  ATGTGTGTCT GTGCTGTCAC CTTGTGGTGG TTGTGGCTAT CTCTGCGCTC TTAAACAAAT
  GATCCTTTTC AGAGATCGGT ATATAAGATG GAAAAGAATG ACCCCATCTT CTAATGAGCC
  Y
  CAAGAACCCT GGCAGCATCA GCAGACTAAA GGCCGAGGGT TGGCCATCAC ATGTAAGCTA
  TTCACTGGTG TGGTGGCAGT TGGTCTCTGT CTCCCATCAC CCCCCACATC ACCCTTGCTA
  TACTCCCCTA TACTTCCCAC TATATCCTCC CCACTACACC CCTGCTATAT CCCCCCTGTC
  ATCCTCCCCA CCATACCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373453199	MGP_WTSI_7_149765274	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243878428					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373453199	MGP_WTSI_7_149765274	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142133106 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19965	CpG island 19965	943 bp proximal
Gm56421	predicted gene, 56421	1451 bp downstream
H19	H19, imprinted maternally expressed transcript	1223 bp upstream
Rr27	regulatory region 27	779 bp proximal
Rr370601	regulatory region 370601	879 bp upstream
Rr658231	regulatory region 658231	734 bp distal
Rr658232	regulatory region 658232	89 bp distal
Rr658233	regulatory region 658233	501 bp proximal
Rr658234	regulatory region 658234	841 bp proximal
Rr658235	regulatory region 658235	937 bp proximal
Tssr2461	transcription start site region 2461	1443 bp downstream
Tssr70218	transcription start site region 70218	1962 bp downstream
Tssr70219	transcription start site region 70219	1924 bp downstream
Tssr70220	transcription start site region 70220	1812 bp downstream
Tssr70221	transcription start site region 70221	1773 bp downstream
Tssr70222	transcription start site region 70222	1715 bp downstream
Tssr70223	transcription start site region 70223	1573 bp downstream
Tssr70224	transcription start site region 70224	1528 bp downstream
Tssr70225	transcription start site region 70225	1490 bp downstream
Tssr70226	transcription start site region 70226	1395 bp downstream
Tssr70227	transcription start site region 70227	1313 bp downstream
Tssr70228	transcription start site region 70228	1300 bp downstream
Tssr75829	transcription start site region 75829	1991 bp upstream
Tssr75830	transcription start site region 75830	1964 bp upstream
Tssr75831	transcription start site region 75831	1943 bp upstream
Tssr75832	transcription start site region 75832	1877 bp upstream
Tssr75833	transcription start site region 75833	1800 bp upstream
Tssr75834	transcription start site region 75834	1526 bp upstream
Tssr75835	transcription start site region 75835	1494 bp upstream
Tssr75836	transcription start site region 75836	1472 bp upstream
Tssr75837	transcription start site region 75837	1449 bp upstream
Tssr75838	transcription start site region 75838	1379 bp upstream
Tssr75839	transcription start site region 75839	1357 bp upstream
Tssr75840	transcription start site region 75840	1328 bp upstream
Tssr75841	transcription start site region 75841	1301 bp upstream
Tssr75842	transcription start site region 75842	1284 bp upstream
Tssr75843	transcription start site region 75843	1278 bp upstream
Tssr75844	transcription start site region 75844	1248 bp upstream
Tssr75845	transcription start site region 75845	1215 bp upstream