rs243894811 SNP Detail

Summary

• ID
  rs243894811
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:3727040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCGAGAC TGCACAACTA
  GTGGTGGTTG CTTGGAGTCT AAACTCACAG TAGAAAAACA CCCTAATACC TAATGTTTAT
  GTGAATACTA AATGATATAG GACTATAACT AACGTGTCTT CACTAAAGCA GAAACATTCC
  ATAATCACCA GCTCACAAAT ACTTGATCAT ACTAACAACA GTGGTCCTGC CTCTCTTCCT
  S
  TCTTACTATT TTAATGTCTT TTTTTTTTTG TTGTTTTTGT TGAAGGAATA CAGTATTTTA
  TTGCCCCAAA ACATTCTTTC CAGGGCCTTC TGTGTACCCT GAAGAGCTGT ATGAATTTTT
  TTTTTAATTG GTAATTTCTC CCAGCTTTTA AAAAGGCATT GCATGAGCTT TGGGCTGCTA
  GCTGCTTCAA GTTTCCTAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320205083	CHEV_2_3643275	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243894811					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3727040 () rs orientation: forward

Symbol	Name	Function Class
Fam107b	family with sequence similarity 107, member B	Intron
Rr367092	regulatory region 367092	1649 bp upstream
Rr396754	regulatory region 396754	820 bp upstream
Rr550941	regulatory region 550941	1726 bp distal
Rr550942	regulatory region 550942	300 bp proximal
Tssr15911	transcription start site region 15911	1171 bp upstream
Tssr22380	transcription start site region 22380	717 bp downstream
Tssr22381	transcription start site region 22381	784 bp downstream