rs243898721 SNP Detail

Summary

• ID
  rs243898721
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40159989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGGGGCT GGTGAGATGG
  CTCAGTGGGT AAGAGCACCC GACTGCTCTC CCGAAGGTCA GGAGTTCAAA TCCCAGCAAC
  CACATGGTGG CTCATAACCA TCTGTAACAA GATCTGACGC CCTCTTCTGG AGTGTCTGAA
  GACAGCTACA GTGTACTTAC ATATAATAAA TAAATAAATC TTAAAAAAAA AAAAAAAAAA
  R
  AAGAAGGTAC CAGAAGTACT AAGAGAAAAA TCTTTGATTT TCTGGAAAAC CCAGTTCTGG
  TGAGCTGGAG CTGAGAAAGC TGTGATTAAG AAGAGAGTAC CACCACTGAA CTGAAATCTT
  CTATGAAGTA TTTCCTGAGA GTCAGCAATT TGAAGCCTTG TTCTAGTCAA GAGGAGGGGT
  TGTACCCTAA ACTGGAATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CZECHII/EiJ	KK/HlJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	SWR/J
ss398169435	MGP_WTSI_17_39986043	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CZECHII/EiJ	KK/HlJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	SWR/J
rs243898721					SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398169435	MGP_WTSI_17_39986043	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40159989 () rs orientation: forward

Symbol	Name	Function Class
AY036118	cDNA sequence AY036118	within coordinates
Cpgi9159	CpG island 9159	267 bp distal
Gm26917	predicted gene, 26917	310 bp downstream
Rn18s	18S ribosomal RNA	897 bp distal
Rn18s-rs5	18s RNA, related sequence 5	896 bp downstream
Tssr144610	transcription start site region 144610	1883 bp downstream
Tssr144611	transcription start site region 144611	1760 bp downstream
Tssr144612	transcription start site region 144612	1650 bp downstream
Tssr144613	transcription start site region 144613	1506 bp downstream
Tssr144614	transcription start site region 144614	1484 bp downstream
Tssr144615	transcription start site region 144615	1403 bp downstream
Tssr144616	transcription start site region 144616	1313 bp downstream
Tssr144617	transcription start site region 144617	1286 bp downstream
Tssr144618	transcription start site region 144618	1269 bp downstream
Tssr144619	transcription start site region 144619	1226 bp downstream
Tssr144620	transcription start site region 144620	1203 bp downstream
Tssr144621	transcription start site region 144621	1089 bp downstream
Tssr144622	transcription start site region 144622	1073 bp downstream
Tssr144623	transcription start site region 144623	1043 bp downstream
Tssr144624	transcription start site region 144624	908 bp downstream
Tssr144625	transcription start site region 144625	891 bp downstream
Tssr144626	transcription start site region 144626	862 bp downstream
Tssr144627	transcription start site region 144627	830 bp downstream
Tssr144628	transcription start site region 144628	671 bp downstream
Tssr144629	transcription start site region 144629	597 bp downstream
Tssr144630	transcription start site region 144630	588 bp downstream
Tssr144631	transcription start site region 144631	491 bp downstream
Tssr144632	transcription start site region 144632	381 bp downstream
Tssr144633	transcription start site region 144633	334 bp downstream
Tssr148065	transcription start site region 148065	1314 bp upstream
Tssr148066	transcription start site region 148066	1237 bp upstream
Tssr148067	transcription start site region 148067	1137 bp upstream
Tssr148068	transcription start site region 148068	1039 bp upstream
Tssr148069	transcription start site region 148069	856 bp upstream
Tssr148070	transcription start site region 148070	792 bp upstream
Tssr148071	transcription start site region 148071	766 bp upstream
Tssr148072	transcription start site region 148072	438 bp upstream