rs243916706 SNP Detail

Summary

• ID
  rs243916706
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:180681847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCTCTGC CCCTGCCTTC
  TCGGTAAACT GTCAGCATGA AAGCAGTTCC CTACCCCAGC TCTGTGGGCA GCGAGCTACT
  GGCCAGAGAG GAGAGGTGCT TGGAGACAAG CTGTAGGGTG CTAGGGATGG TCCTGAGGGA
  TGCCACTAAG GAGAAGGTGC TCGAGTACTT TGGTTCCTAG AGTGCTTTGG TGGCACGCGG
  G
  GGGGCGGGGG GGAGGCTGGG GGGGAGGTGC GAGAGGGAGG GGGCATCTAA GCAGCAGGTG
  ATGGAAGGAG AGACAACGGG TTCCCAAGAA GAAAGAAACC CTGTCCAACA CCAAAAGCCA
  GATCCCAACC ATGCCTTGTC CCAGAGACTC TGCCGTTGAC TCCAAGCCCC AAGATGGAGA
  CAATCCTGAA GTTGAAGGCA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	ZALENDE/EiJ
ss356772255	MGP_WTSI_2_180774759	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	ZALENDE/EiJ
rs243916706					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356772255	MGP_WTSI_2_180774759	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180681847 () rs orientation: forward

Symbol	Name	Function Class
Chrna4	cholinergic receptor, nicotinic, alpha polypeptide 4	Intron
Cpgi12912	CpG island 12912	230 bp distal
Gm74971	predicted gene, 74971	1233 bp downstream
Rr572909	regulatory region 572909	990 bp distal
Rr572910	regulatory region 572910	259 bp distal
Rr572911	regulatory region 572911	1923 bp proximal
Tssr28154	transcription start site region 28154	862 bp upstream
Tssr28155	transcription start site region 28155	826 bp upstream
Tssr28156	transcription start site region 28156	772 bp upstream
Tssr28157	transcription start site region 28157	734 bp upstream