rs243931823 SNP Detail

Summary

• ID
  rs243931823
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:48530722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTCAGA AGGAAGGACT
  TGTGAAGTGG CCTGAGAACA ACCCTCCAAT TCAGCCTCTG CGCTCTAAGC GCACGACCGG
  GCATTTACAA AGGGCTTTGG GATCTTGACC CCCTTTTTCA GGCTTCTTTC AATACACGAA
  GTACTGGGGC GAGGGAAGGA TTCCCTAGGT GCCGAAATCA CCGCGATGCC AAAGCGCACC
  R
  TACGCTGCGC TCCCGGTCCC AGGTACAGTC CCCAGCAGTA GCCCGCGTCC CGCCCGGCGC
  AAGCACTGGC TCCTCCTCCC CGCCAACTGC ACCGCCCCCG GGGGCAGCCA GACAGCATCT
  CACGGTTTCC AGGGCGACGG CTCCGAGCCA ATCAGTAAGC CCGGTGAAGG CCTGCGATTG
  GCTAGAGGTC CCCAAGGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371266116	MGP_WTSI_7_56136344	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243931823					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371266116	MGP_WTSI_7_56136344	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48530722 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19137	CpG island 19137			within coordinates
E2f8	E2F transcription factor 8			Intron
				mRNA-UTR
Gm2788	predicted gene 2788			within coordinates
Rr400335	regulatory region 400335			within coordinates
Rr400336	regulatory region 400336			675 bp upstream
Rr646935	regulatory region 646935			1594 bp distal
Rr646936	regulatory region 646936			1087 bp distal
Rr646937	regulatory region 646937			within coordinates
Rr646938	regulatory region 646938			57 bp proximal
Rr646939	regulatory region 646939			411 bp proximal
Rr646940	regulatory region 646940			612 bp proximal
Tssr66768	transcription start site region 66768			358 bp upstream
Tssr66769	transcription start site region 66769			890 bp upstream
Tssr72630	transcription start site region 72630			5 bp downstream
Tssr72631	transcription start site region 72631			18 bp downstream
Tssr72632	transcription start site region 72632			58 bp downstream
Tssr72633	transcription start site region 72633			630 bp downstream
Tssr72634	transcription start site region 72634			667 bp downstream
Tssr72635	transcription start site region 72635			1377 bp downstream