rs243952002 SNP Detail

Summary

• ID
  rs243952002
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16350359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAATGAGG GTGGGGTGTA
  AAGGAGTGAC CTACACGTAT TGAGTACGCA GTAAGCATTG CTAAATAAAA TTACATGGGC
  TCGACCAAAT CCAGCAGCCA GAACTTCATG AAGTCAAAAA GGTCATGCTG TGGGTGATAT
  TCCTGGAGTC TGCTTTAAGG TGGTTAAGGC AGCCAGTATG TATGTCTCTT TTGGCTCTCT
  W
  CAAAGGCAAG AAGGAAAAAT CAATATCATA AAATTTTACA GTGGAAACAC AGTAATGAAT
  TTTCATATTC TGAAAAAAAA GTTTACATGT GCTCAAATTT TAAAACACCC CAACAAATGA
  AGCCTCTCAT TAAAGTTTGT TAGGAGGGCA GGTTCTTGTG GTGTGGGCTG AAGAGATCAA
  CAGTTAAAAG TGGGTTCCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370695761	MGP_WTSI_7_17201783	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243952002					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370695761	MGP_WTSI_7_17201783	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16350359 () rs orientation: forward

Symbol	Name	Function Class
Arhgap35	Rho GTPase activating protein 35	1046 bp upstream
Cpgi18383	CpG island 18383	652 bp distal
Gm29443	predicted gene 29443	within coordinates
Gm44589	predicted gene 44589	within coordinates
Rr400125	regulatory region 400125	758 bp downstream
Rr642707	regulatory region 642707	1452 bp distal
Rr642708	regulatory region 642708	951 bp distal
Rr642709	regulatory region 642709	1325 bp distal
Rr642710	regulatory region 642710	702 bp proximal
Rr642711	regulatory region 642711	810 bp proximal
Rr642712	regulatory region 642712	1890 bp proximal
Tssr64615	transcription start site region 64615	814 bp downstream
Tssr70753	transcription start site region 70753	1828 bp upstream
Tssr70754	transcription start site region 70754	1811 bp upstream
Tssr70755	transcription start site region 70755	1723 bp upstream
Tssr70756	transcription start site region 70756	1646 bp upstream
Tssr70757	transcription start site region 70757	1629 bp upstream
Tssr70758	transcription start site region 70758	1574 bp upstream
Tssr70759	transcription start site region 70759	1543 bp upstream
Tssr70760	transcription start site region 70760	1413 bp upstream
Tssr70761	transcription start site region 70761	1367 bp upstream
Tssr70762	transcription start site region 70762	1296 bp upstream
Tssr70763	transcription start site region 70763	1158 bp upstream