rs243955797 SNP Detail

Summary

• ID
  rs243955797
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45864778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aaggtcaca gcattgactc ctgggagGAG
  AGGAGGCTCT CCTCAACTCT TTCCCTCGCC ATCTCCAGCT CAAGTTGAAC CAACTCTGTC
  TCTTTCCCCA CTGAATAAGT AGTTGGCCCT ACTATGTGAC AAACATTCTA CATTGTGATT
  K
  CCAGAAACTT TCAAACATTT TATTTAAAGG AATTTTATTA TTAAAggagt ggtggtacac
  acctttagtc ccatcactca gaagacagag gcaggtggat ctctgagttc gagaccagcc
  tggtctacag agtgattcca ggacagccag                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325403382	CHEV_17_45690801	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243955797					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45864778 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9193	CpG island 9193	1723 bp proximal
Nfkbie	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	1851 bp upstream
Rr405301	regulatory region 405301	1421 bp downstream
Rr405302	regulatory region 405302	1620 bp upstream
Rr527425	regulatory region 527425	1299 bp distal
Rr527426	regulatory region 527426	1162 bp distal
Rr527427	regulatory region 527427	526 bp proximal
Rr527428	regulatory region 527428	1404 bp proximal
Tssr144787	transcription start site region 144787	1784 bp upstream
Tssr144788	transcription start site region 144788	1841 bp upstream
Tssr144789	transcription start site region 144789	1875 bp upstream
Tssr144790	transcription start site region 144790	1942 bp upstream
Tssr144791	transcription start site region 144791	1953 bp upstream