rs243969256 SNP Detail

Summary

• ID
  rs243969256
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101900292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGGGCCC TGGAGACCGG
  CGAGTGGACG GCCTCGAGGG CGCCCTCTGG TGCTTCTAAC CCAGGCCTTG GGCGCAGTTT
  TCCTGGAGAA TCCACAGTCT TGATTCTTTT AACAACTTTC TGGGTGCTCT ACCACGTGCA
  GAGCTCCGCA AGGTACAGTG AAAACAACAC AAGATAAACA CCCCGTCTTA CAGAGGACCT
  M
  CAAATAAAGT GGATCAGGTC TGACAGGTAG TTTAATGTTT CCAAGTATCA GTTTTTTGTT
  TTGTTTTGTT TTGGTAAAAT CAACAAAAAA AATTTCTCCA CCCAGAGGAT GTGAAGATTA
  CAGAATAGGT ATCCGTGCTG TGGTACTGTA TAGAAAGTCA AGTTAGGACA ATCAAACTCA
  GGCTGGTCAG TGACTGACTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353665	CHEV_7_109399599	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243969256					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101900292 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	101 bp distal
Rhog	ras homolog family member G	967 bp upstream
Rr652562	regulatory region 652562	1008 bp distal
Rr652563	regulatory region 652563	472 bp distal
Rr652564	regulatory region 652564	143 bp distal
Tssr2354	transcription start site region 2354	809 bp downstream
Tssr68328	transcription start site region 68328	1392 bp downstream
Tssr68329	transcription start site region 68329	1371 bp downstream
Tssr68330	transcription start site region 68330	830 bp downstream
Tssr73939	transcription start site region 73939	1711 bp upstream
Tssr73940	transcription start site region 73940	1664 bp upstream
Tssr73941	transcription start site region 73941	1611 bp upstream
Tssr73942	transcription start site region 73942	1526 bp upstream
Tssr73943	transcription start site region 73943	999 bp upstream
Tssr73944	transcription start site region 73944	962 bp upstream
Tssr73945	transcription start site region 73945	947 bp upstream
Tssr73946	transcription start site region 73946	751 bp upstream
Tssr73947	transcription start site region 73947	606 bp upstream
Tssr73948	transcription start site region 73948	570 bp upstream
Tssr73949	transcription start site region 73949	537 bp upstream
Tssr73950	transcription start site region 73950	490 bp upstream