rs243974590 SNP Detail

Summary

• ID
  rs243974590
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91445947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGAATGGTT TAAGTTGAGA
  ACAGAGCAAT ACATAAGTTA GAAAAATCAT CTGATAAGCA GTTGTAAATT ATATGCCCAA
  ATTACCTGGG ACTGTGGATA GAATAATGTT AATCATATTT TATTGCAGAA ATTGTTTTTT
  TTTCAAGATA GGGTGTTTTT GTTTGTTGCT GTTTTTGTTT TCTTTCTTTT TTTTTTTTTT
  Y
  TTTTTTGTGG ACAGGCTCTA ATGTCATGGC TTACAGCTTT GTAGCTGAAG CTGCCCTGTT
  GTCATCTTTC AATCAATGGT GGCGTCACAA TTTTTTTTTT AAATAAAAAT ATTTATACAC
  TGTGTTGCTT TTTAACATTT TGAGACATTG GGTATTTTTT TTTGTTTGTT TAATGAGATG
  AAACATAAAC TAAGGGAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss397326560	MGP_WTSI_16_91649304	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs243974590					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397326560	MGP_WTSI_16_91649304	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91445947 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8459	CpG island 8459	665 bp distal
Rr325570	regulatory region 325570	within coordinates
Rr404966	regulatory region 404966	1200 bp downstream
Rr404967	regulatory region 404967	within coordinates
Son	Son DNA binding protein	within coordinates
Tssr139422	transcription start site region 139422	1953 bp downstream
Tssr139423	transcription start site region 139423	1201 bp downstream
Tssr139424	transcription start site region 139424	1154 bp downstream
Tssr142102	transcription start site region 142102	1409 bp upstream
Tssr142103	transcription start site region 142103	1345 bp upstream