rs243979923 SNP Detail

Summary

• ID
  rs243979923
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110664538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTACAGGG TGAGTTCCAG
  GACAACCAGG GAAACCCTGT CTGGGGGAGT TGGGGGGAAG AAAGAAGAAA GAATGTGCTC
  TGTGGACAAA AACACAGCAG GCAATTTCCT CTGGGAGAGG AAGAAAGTCA CCCATCTCCA
  TCTCGCCCTC CCTCCAGGGA ACGAGGCCCT TTCCCAGCAG CTGAGGAAAG ACCTCTGGCC
  Y
  CCCTCTCTGA ACTGAGTGGG GGCATTAAGT AGAAACAGTT TTCTTTTTTG AGGTATTAGC
  TTTTTTTATA CAGGATCACA TTTTGCAACC CCTTGCTATG CAGAGCAGGC TGGCCCTGAA
  TTCACATAGA TCTGCCTGCT CCTGTTGAGG TGTGTATCAT CGTCCCCAGC TGTACTCTCC
  AGGGCCACTC CTTTTCCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387341325	MGP_WTSI_12_111936314	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243979923					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387341325	MGP_WTSI_12_111936314	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110664538 () rs orientation: forward

Symbol	Name	Function Class
4932703K07Rik	RIKEN cDNA 4932703K07 gene	988 bp downstream
Cpgi5120	CpG island 5120	963 bp distal
Gm60092	predicted gene, 60092	961 bp upstream
Hsp90aa1	heat shock protein 90, alpha (cytosolic), class A member 1	1709 bp upstream
Rr403501	regulatory region 403501	1502 bp downstream
Rr472969	regulatory region 472969	1219 bp distal
Rr472970	regulatory region 472970	471 bp proximal
Rr472971	regulatory region 472971	972 bp proximal
Rr472972	regulatory region 472972	1609 bp proximal
Tssr115232	transcription start site region 115232	1469 bp downstream
Tssr115233	transcription start site region 115233	950 bp upstream
Tssr117789	transcription start site region 117789	1842 bp upstream
Tssr117790	transcription start site region 117790	1785 bp upstream
Tssr117791	transcription start site region 117791	1686 bp upstream
Tssr117792	transcription start site region 117792	1657 bp upstream