rs243998879 SNP Detail

Summary

• ID
  rs243998879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56836963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTACCCA ATCTTGCTAG
  GGCTTCCTAC CTCCAGGTTA CTATTGTTCT TACTTATTGC TGATTAACTG GTATAAAGTA
  GTGCTGCTGA AGGTTGGGAC ATTTGGCTGT TTTGAGGGTC ATGACTCCTA GACCTCTGAC
  TCCAAAACTC ATAAACTTTG ACTCCCTATG AAGGATAACA GCTGGTCGTG ATGACACACA
  Y
  GGGAGACTGA GTGAGTGCCA GGCCAGCCTG TGCCACATCT AGCAAGATCT TACCAAAAGT
  TAACCAAACA AACCGGGAGC TGAAACAGCA CTGTCATGAA TTGGAGGCTG GACTCCAGTC
  CCTTTCTTAA ACAAACAGAC AAACGAGTGG TGGTGGACAC ATTTAGTCCC AGAATTTGGG
  AGACAGAGGC AGGTGAATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377679372	MGP_WTSI_9_56777486	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243998879					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377679372	MGP_WTSI_9_56777486	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56836963 () rs orientation: forward

Symbol	Name	Function Class
4930442G15Rik	RIKEN cDNA 4930442G15 gene	1933 bp upstream
Cpgi21803	CpG island 21803	986 bp distal
Gm70242	predicted gene, 70242	1701 bp downstream
Rr368760	regulatory region 368760	1158 bp downstream
Rr401388	regulatory region 401388	1411 bp downstream
Rr679548	regulatory region 679548	1319 bp distal
Rr679550	regulatory region 679550	1620 bp distal
Rr679551	regulatory region 679551	1462 bp distal
Rr679552	regulatory region 679552	818 bp distal
Rr679553	regulatory region 679553	1275 bp distal
Snx33	sorting nexin 33	1308 bp upstream
Tssr89746	transcription start site region 89746	1684 bp upstream
Tssr89747	transcription start site region 89747	1557 bp upstream
Tssr89748	transcription start site region 89748	1518 bp upstream
Tssr89749	transcription start site region 89749	1365 bp upstream
Tssr89750	transcription start site region 89750	1287 bp upstream