rs244000218 SNP Detail

Summary

• ID
  rs244000218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:145878245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTCCCTTA ACATCTTGGC TACATAATTT CCTTTTGAAT
  AAAGTTTCCA AATGTTAAAA TAACCATAGA AGAAAGTCTA AACTCCCCAT GGAACTGGGA
  Y
  TTTTTTTTTT TTTTTTTTGG TTTTTCAAGA CAGGGTTTCT CTGTGTAGCC CTGGCTATCC
  TGGAACTCAC TTTGTAAACC AGACTGGCCT CAAACTCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322075149	CHEV_6_145881039	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244000218					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:145878245 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18164	CpG island 18164	1513 bp proximal
Rr641246	regulatory region 641246	184 bp proximal
Rr641247	regulatory region 641247	1232 bp proximal
Sspn	sarcospan	within coordinates
Tssr59564	transcription start site region 59564	1594 bp upstream
Tssr59565	transcription start site region 59565	1618 bp upstream