rs244001530 SNP Detail

Summary

• ID
  rs244001530
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:108777516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCTGGGC TGCTCCTGCC
  TCCCGCGGCC TGGCGACGCC TTACGCCTCA CCCTCGGCCA GGACCCGCCG CACCCGCAGA
  CGCAGCTCGC CCAGCTCCAC TGTCTGCCCC ACGAAGTCAC TCTGATCACG GCCCGCAGCT
  CCGCCAAGAG AACCAGGGCC CGCCAGGAAG TCCAGCGCAG ACTGCAGCAG CGACATGGCG
  Y
  CGGCCGCTCC GCGGCAGCGG GAGCCAGGCT CCAGCTCCGC ACTGCCGGGT TAGCAGCTGC
  GGGCGAACAA CCCGGCCATC TTCCGCCCGC GCCGTGACGT AAATCAGAGA GCGAGTTGCG
  TCCCGACGCT GCGGCCCCGC CCTGACGCAG CAGGCGGAAG GGCGCGTGTT TCTGCAGAGC
  CAGCAGCAGC AGCAGGCGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366206941	MGP_WTSI_5_109058669	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244001530					SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366206941	MGP_WTSI_5_109058669	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:108777516 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16204	CpG island 16204	within coordinates
Gak	cyclin G associated kinase	within coordinates
Tmem175	transmembrane protein 175	133 bp upstream
Tssr47844	transcription start site region 47844	141 bp upstream
Tssr47845	transcription start site region 47845	340 bp upstream
Tssr47846	transcription start site region 47846	378 bp upstream
Tssr52443	transcription start site region 52443	21 bp downstream
Tssr52444	transcription start site region 52444	36 bp downstream
Tssr52445	transcription start site region 52445	62 bp downstream