rs244007526 SNP Detail

Summary

• ID
  rs244007526
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84627986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCGTGTGC GCGCGGGTGC
  TTGGCGCCCT GTTTGTGTAG GTGTCTGGGT GTGAGTGGAG AGGGTGCGTG TGCGCGCAGC
  GCGCGGGCCC GGGCTCCCCA GAGAAGCCAT GTCGGGGGGC TGGCACCGCA GGATGCTGGG
  CCAGCCCCCC CCCCCCCCCG ACATGGCTTG TTTTTCTCTG GGAGGCAGTG GCGCTAATGG
  K
  GGTTGGGGGT GGTATGGGGA GAGGTATGTC TGGGTGTCGA GTGAGTTTCA GCCCGGAGGG
  GTGCTTTGGG CAACCCTGGT GCAGTTGTGA GACATCTTCT GTTAGTGGTA CCCTGTTAAG
  CACGGATGGA GGCTGTCAGG TTGGATCTAC CGGAACGAGC TTTCTCTCCT CTTCCAGGTG
  TTCCTGAAAT AGAGCTGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375388208	MGP_WTSI_8_86425256	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244007526					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375388208	MGP_WTSI_8_86425256	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84627986 () rs orientation: forward

Symbol	Name	Function Class
Adgrl1	adhesion G protein-coupled receptor L1	within coordinates
Cpgi20662	CpG island 20662	within coordinates
Gm26721	predicted gene, 26721	1630 bp upstream
Rr178090	regulatory region 178090	1615 bp proximal
Rr186961	regulatory region 186961	within coordinates
Tssr78300	transcription start site region 78300	1388 bp downstream
Tssr78301	transcription start site region 78301	1264 bp downstream
Tssr78302	transcription start site region 78302	1247 bp downstream
Tssr78303	transcription start site region 78303	1192 bp downstream
Tssr78304	transcription start site region 78304	869 bp downstream
Tssr78305	transcription start site region 78305	740 bp downstream
Tssr78306	transcription start site region 78306	712 bp downstream
Tssr78307	transcription start site region 78307	640 bp downstream