rs244014499 SNP Detail

Summary

• ID
  rs244014499
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81005660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGCATTC TGGTCGATTC
  TCTGCAAGCC ACTCGATCCT TACTCTTGTT CTAACTAAAT TAAAAAGAGA GAGAGAGAGC
  TCTTCCAAGC TTGACTTCTA TCGCAAGCCC CCTGTGGCTT CCTAGTACCC ACAAGAAGTA
  GAGTAAAAAG TGTTTTCTTT TGAGAACCGG TCTCATGAAG CTCAGGCTCA CCTGGTATTC
  M
  CCTCTGTAAC TAACCCCACT GTAGCTTCTA TTTCTCAAGT GCTGGCGTGA CAGGCACGGC
  TCACCACACC TTATTCTGTG ATGCTGAGGA TTAAAGAAGG GTTCTCTGTA CGATAGGCAA
  GCACTTCACC AATCGAGCCC CCGCCCCTTT TGTACTCTTG TTCGATATTT ATTTATTTAT
  TTATTTATTT ATTTATTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381031925	MGP_WTSI_10_80632571	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244014499					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381031925	MGP_WTSI_10_80632571	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81005660 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1946	CpG island 1946	1783 bp distal
Cpgi1947	CpG island 1947	643 bp distal
Rr402075	regulatory region 402075	1784 bp downstream
Rr402076	regulatory region 402076	723 bp downstream
Rr402077	regulatory region 402077	42 bp downstream
Rr435533	regulatory region 435533	1914 bp distal
Rr435534	regulatory region 435534	1413 bp distal
Rr435535	regulatory region 435535	1072 bp distal
Rr435536	regulatory region 435536	within coordinates
Tssr94693	transcription start site region 94693	1786 bp downstream
Tssr98567	transcription start site region 98567	1977 bp upstream
Tssr98568	transcription start site region 98568	1921 bp upstream
Tssr98569	transcription start site region 98569	942 bp upstream