rs244016863 SNP Detail

Summary

• ID
  rs244016863
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:127924032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCATTGTT ATCTTGATTG
  TGTGCTGTGT ATTCCGAGGC ACATAATAAG CAAGCAACAA GCAACACATA AGCAAGATAA
  TGATGATAAC AGACCTTACC ATGCACCCTC GTGGTCATAT TTACTTAGTA TTGCAGTGCA
  GGAACATCTT TTAAGAGCAC AACATAAATA AAAGTTGGTA CCATCACAAT AAAGTGTTGG
  S
  ATAGTATGCA GACCCAGATA AAGGGAGTCC ATAGCTTAAT CCAGTCCCAG AGATGCCAAG
  AAAGAAAAAA AAAGACCTTG ATTTTAAGAG GGAAATGAAA AGAGCAGGCT TAAGCAGGAG
  TGGGGTTACT GCTGATCTCC TGGGTTCTTG ACTCTAGGCT ATCTATGTGC CTGCTGATGA
  CCTGACTGAC CCTGCCCCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323531650	CHEV_10_127525219	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244016863					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127924032 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp5f1b	ATP synthase F1 subunit beta			Intron
				Noncoding-Transcript-Variant
Rr441098	regulatory region 441098			1474 bp distal
Rr441099	regulatory region 441099			1573 bp distal
Tssr96324	transcription start site region 96324			1996 bp downstream
Tssr96325	transcription start site region 96325			1857 bp downstream
Tssr96326	transcription start site region 96326			1841 bp downstream
Tssr96327	transcription start site region 96327			1814 bp downstream
Tssr96328	transcription start site region 96328			1774 bp downstream
Tssr96329	transcription start site region 96329			150 bp upstream
Tssr96330	transcription start site region 96330			210 bp upstream
Tssr96331	transcription start site region 96331			1994 bp upstream