rs244040580 SNP Detail

Summary

• ID
  rs244040580
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79228054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAGAGGG GGGATGAATG
  AGGGCGATAT ACATTCAAAC TGTACATAAT CTCTAATTCA TAATCTCATA AACACATAAT
  CTCTAATACC ATTTACAGCG CAGAAGAAAG GAAGTTAGGA TATAAGCCAA TCTTTACTCA
  GAAGTGTATG CCTTTTGCCA ACGAGACTAC AGCTAGTCCA CTCAGTTTCT ACAAGCTAAA
  A
  TCAGACAGCT AACTTACTTT GGCTGCACAA AATTGAGAAA TGTGATTGGC TGTCACAGTG
  TAAAAATTAG AGACATCTAT ACATAAGTTT GGATTTCTAG CTTCTCTTAA GTAACTGGAA
  GTTCTAGCAA CATGAGGTCA ACATCCCTGC ATGGCAGGAA TTGTCCGGAG CTGAGTGATA
  TCTGCCCTTT AAACATGGGT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323759596	CHEV_11_79150730	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244040580					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79228054 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3366	CpG island 3366	1969 bp proximal
Gm57411	predicted gene, 57411	within coordinates
Gm73396	predicted gene, 73396	within coordinates
Gm73418	predicted gene, 73418	1765 bp upstream
Rr236740	regulatory region 236740	54 bp distal
Rr247290	regulatory region 247290	1346 bp proximal
Rr251790	regulatory region 251790	347 bp proximal
Rr253753	regulatory region 253753	79 bp distal