rs244042172 SNP Detail

Summary

• ID
  rs244042172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:57956643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGGACTGT CCTAGCGCTG GCCTCACTCC
  TGGCTTCCCC GCCCCACTCT AAGCTGCCGA ACAAGAACCT TAGTTTATAA GGGGCGGAGC
  TAGCACAGGC TCCTGGAGCA GCTTCGGGTT TTTCCAGGCT CCAGACGCCG CGCGGCAGCT
  R
  CCCCTAAGAG CCAACTTCCA GCTGCCTCAA GGGCACTTTA ACAGCGAACA GCGCCGGGGT
  AGATCACGGT CCTCTCTCAC ACCGTAGAGT CCTTCTGTAA TCACACTGCC CATGCCCCAA
  ACTAGACCTA AGTCAGATAC TTCCAGATTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321136107	CHEV_4_57969515	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244042172					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:57956643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14335	CpG island 14335	within coordinates
Gm35344	predicted gene, 35344	109 bp upstream
Gm57068	predicted gene, 57068	within coordinates
Rr398279	regulatory region 398279	34 bp downstream
Rr592848	regulatory region 592848	243 bp distal
Rr592849	regulatory region 592849	857 bp distal
Rr592850	regulatory region 592850	8 bp distal
Rr592851	regulatory region 592851	195 bp distal
Rr592852	regulatory region 592852	91 bp proximal
Rr592853	regulatory region 592853	592 bp proximal
Tssr1183	transcription start site region 1183	285 bp upstream
Tssr1184	transcription start site region 1184	219 bp upstream
Tssr37396	transcription start site region 37396	17 bp downstream
Tssr37397	transcription start site region 37397	281 bp upstream
Tssr41866	transcription start site region 41866	345 bp upstream
Txn1	thioredoxin 1	232 bp upstream