rs244055705 SNP Detail

Summary

• ID
  rs244055705
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17214316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAGCCTT TCCCCATCTG
  ATGGTATGAG GGGAAAGCAG GCGTGCTTTT CCTATCTATC TGCCTTCACT TCCTGATGGA
  GAATGAATCT AACCTGTGGC TGCTACCTCT GTGGCCATCC TTCAGTTCCA TTGGAACCTA
  GAGTTGTTGT GCCAGGGAAA TGTTAGTGAT CTCCAACCCC CCCCCAAAAA AAAAAAAAAA
  C
  AGACAGGAGT CGATCTGATG CAACTCACAG CAGGGTCTTT ATTCTATTGG AGCTAGCTCA
  TCCCCCAACC CCTCAATGAA CCACCATCAC ACAGGACAGT TTGGGTGGTG GGAGAGCCCC
  AAATGTCTAT CGTGGCAAGG CTTTATAGTA AGTAGCAAGC AGGGAGTACA TCTAACTGGA
  AAGCTACCGT GGTCTTTAAC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LP/J	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss401882760	MGP_WTSI_19_17311442	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LP/J	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs244055705					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401882760	MGP_WTSI_19_17311442	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17214316 () rs orientation: forward

Symbol	Name	Function Class
Gm50276	predicted gene, 50276	1095 bp downstream
Rr544814	regulatory region 544814	1582 bp proximal