rs244057409 SNP Detail

Summary

• ID
  rs244057409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67854838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAA GTCTAGTCCC CGCCCCCGCC
  Y
  CCTCCCCCTT CCTGGATCTT CACTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323722453	CHEV_11_67777514	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244057409					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67854838 () rs orientation: forward

Symbol	Name	Function Class
Cfap52	cilia and flagella associated protein 52	within coordinates
Cpgi3072	CpG island 3072	1422 bp proximal
Rr449567	regulatory region 449567	907 bp distal
Rr449568	regulatory region 449568	283 bp proximal
Rr449569	regulatory region 449569	1620 bp proximal
Tssr108559	transcription start site region 108559	1594 bp downstream
Tssr108560	transcription start site region 108560	1619 bp downstream