rs244063670 SNP Detail

Summary

• ID
  rs244063670
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:75295904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTCACAA ACTGGCTGTC
  CCAGGAGGAC TGGTACAAGG CTCCCAGCTG GGCCAGGTTA GCCCTTCCCT TTTCTTGCTT
  TTCTCGGCTG ACTGACTTGG ATATCAGGCT TTTCAATTCT AGCTGGGACA CTGAGCTATT
  CAAGTCGTTT AACTTGTCAA CTACGTCAGC AGACTGATGC TGGGCACTGA GCTGAATGGT
  C
  CCCGCGATGA AGGAGTCAAA GTCGAAGCCT TGGCCCCTCT CCCTCTCAGC CAGCTGCTGG
  GATGCTTCCT CTAGCGCGAT CTGCGCCTTG ACCAACCCGT TCCTCTCACA CTTGGACTTG
  CCTCTCTTAT CGGATTTTTC TTTACTTTGC TCTTTCCAGT TGGAAAGATC TATAATAAGC
  TTGGGCTCAT AGTAATGGTT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss378085660	MGP_WTSI_9_75236429	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs244063670					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378085660	MGP_WTSI_9_75236429	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:75295904 () rs orientation: forward

Symbol	Name	Function Class
Mapk6	mitogen-activated protein kinase 6	within coordinates
Tssr90534	transcription start site region 90534	1375 bp upstream
Tssr90535	transcription start site region 90535	1133 bp upstream
Tssr90536	transcription start site region 90536	724 bp upstream
Tssr90537	transcription start site region 90537	649 bp upstream
Tssr90538	transcription start site region 90538	621 bp upstream