rs244074671 SNP Detail

Summary

• ID
  rs244074671
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:84255484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cagtgagag actctctctc tctctctctc
  tctctctgtc tctctgttgt ctctctgtct gtttctctct gtctctgtct gtctctctct
  gtttctctgt ctgtctctgt ctgtctctct ctctgtttct ctgtctgtct ctgtctctct
  K
  tctctgtctg tctctctgtc tgtctctgtc tgtctctctg tctctctctt tctgtctctg
  tctctctgtc tctctctgtc tgtctctctg tctgtctctg tctctctctc tgtcactgtc
  tctctctctg tctctctctt tctctctctc                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319824314	CHEV_1_84274338	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244074671					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:84255484 () rs orientation: forward

Symbol	Name	Function Class
Pid1	phosphotyrosine interaction domain containing 1	within coordinates
Rr414250	regulatory region 414250	524 bp proximal
Tssr7647	transcription start site region 7647	869 bp downstream
Tssr12655	transcription start site region 12655	532 bp downstream
Tssr12656	transcription start site region 12656	580 bp downstream
Tssr12657	transcription start site region 12657	654 bp downstream
Tssr12658	transcription start site region 12658	683 bp downstream
Tssr12659	transcription start site region 12659	710 bp downstream
Tssr12660	transcription start site region 12660	1156 bp downstream