rs244076808 SNP Detail

Summary

• ID
  rs244076808
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72219581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAAACACAT TTTATAAAAA GGAAACATTG
  TGTAGTGAAG CGCGGAATGC CCAGAGCACA TAATATAGTT AAGCTTTGAC CAGATCTACC
  ACACAGGCAC ATCTTTAATG ATGGAGCTCT TGGTCATACC TCAAAGTGAG ACTTCGTACC
  K
  CTCTCCATAT ATACAAACGA GTACTTGTTA CCCCAACCTG ATGCTGCATG GTTAAAAAAG
  CTCAGCATAT GTGTCTATGC CTGGATAACT AACTGAGGGT GAAGACTATG GCCCCCTGCA
  CCTGGTGGCC TGCTGGTTTT ACACACGAAG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342249	CHEV_2_72227294	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244076808					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72219581 () rs orientation: forward

Symbol	Name	Function Class
Map3k20	mitogen-activated protein kinase kinase kinase 20	within coordinates
Rr558965	regulatory region 558965	644 bp proximal
Rr558966	regulatory region 558966	932 bp proximal
Rr558967	regulatory region 558967	1722 bp proximal
Tssr18338	transcription start site region 18338	1164 bp upstream
Tssr18339	transcription start site region 18339	1482 bp upstream
Tssr18340	transcription start site region 18340	1504 bp upstream
Tssr18341	transcription start site region 18341	1519 bp upstream