rs244119170 SNP Detail

Summary

• ID
  rs244119170
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:49429234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGTGGAA GGATATTTGG
  GGACAAATAA TCAAAGATCT CTTACAACAC TCCAATAGAT ATAAAATTTG CTAGCTATTT
  GTAATTGTGG ATAATTTTCG CTAGCGTTTC CCTCTCTTTC CCTCCCCTCT TTCTGCGCCC
  CATTTCAAAT TTGGGGGGTG AGAACATCAG AATAACTCCC TATTATTTTG AGTATTGCAT
  K
  TTTCTGGTAG ATTTTAGTAC CACACATAGG CCCTGTTTTT TCTCCTTCCT TTTTTTTTTT
  TATATCAAGA CTGAGAGATC ATTTAGCTAA GAGCTCATCA AAATGAATGC TGGCATGGGT
  AGAGTATTTT ACCTTAAAGA GGAGGGGAAA GATACTCGTG ACCTATGTGT CTCCACCTCC
  CTCTCCTCTC TGGCTACGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385922522	MGP_WTSI_12_50483438	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244119170					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385922522	MGP_WTSI_12_50483438	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:49429234 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4581	CpG island 4581	510 bp proximal
Foxg1	forkhead box G1	432 bp upstream
Gm34304	predicted gene, 34304	623 bp upstream
Gm56518	predicted gene, 56518	1112 bp downstream
Rr465759	regulatory region 465759	within coordinates
Rr465760	regulatory region 465760	567 bp proximal
Rr465761	regulatory region 465761	1303 bp proximal
Tssr3838	transcription start site region 3838	1881 bp upstream
Tssr113389	transcription start site region 113389	456 bp downstream
Tssr113390	transcription start site region 113390	373 bp downstream
Tssr113391	transcription start site region 113391	201 bp upstream
Tssr113392	transcription start site region 113392	225 bp upstream
Tssr113393	transcription start site region 113393	340 bp upstream
Tssr113394	transcription start site region 113394	634 bp upstream
Tssr113395	transcription start site region 113395	1466 bp upstream
Tssr113396	transcription start site region 113396	1674 bp upstream
Tssr113397	transcription start site region 113397	1807 bp upstream
Tssr113398	transcription start site region 113398	1836 bp upstream
Tssr113399	transcription start site region 113399	1905 bp upstream
Tssr113400	transcription start site region 113400	1915 bp upstream
Tssr116231	transcription start site region 116231	621 bp upstream