rs244119498 SNP Detail

Summary

• ID
  rs244119498
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122828527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATAGACAGT TTCAGGTCTA TGCTATTGAT
  TTAAATAGGT ATCTAAAAGG TAACTTTATT TGGAAGTCCA CATCAGCTTA AATTCCACCC
  CCCTACACTT TATTTTACAC CTCCCTACTT CTGTTGTTTG AGGTTTTTTT TTTGCAGTAC
  R
  CACCCTGGGC AGCTCTCTGC TACTGAGATT CGGGCTTACC CAGTGGCttt cggcacaggc
  tctccatgtt gtctaagctg gctgacttcc aactgactat attgtagaag aggctgactg
  gaagctatga ttctcctgcc tccgtcttct                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321934554	CHEV_6_122801586	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244119498					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122828527 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Rr142690	regulatory region 142690	1122 bp proximal
Tssr58711	transcription start site region 58711	1059 bp downstream
Tssr58712	transcription start site region 58712	978 bp downstream
Tssr58713	transcription start site region 58713	910 bp downstream
Tssr58714	transcription start site region 58714	1367 bp upstream
Tssr62984	transcription start site region 62984	1975 bp upstream
Tssr62985	transcription start site region 62985	1936 bp upstream
Tssr62986	transcription start site region 62986	1641 bp upstream
Tssr62987	transcription start site region 62987	1515 bp upstream
Tssr62988	transcription start site region 62988	1449 bp upstream
Tssr62989	transcription start site region 62989	1289 bp upstream
Tssr62990	transcription start site region 62990	1236 bp upstream
Tssr62991	transcription start site region 62991	1207 bp upstream
Tssr62992	transcription start site region 62992	1157 bp upstream
Tssr62993	transcription start site region 62993	1064 bp upstream
Tssr62994	transcription start site region 62994	887 bp upstream
Tssr62995	transcription start site region 62995	833 bp upstream
Tssr62996	transcription start site region 62996	696 bp upstream
Tssr62997	transcription start site region 62997	630 bp upstream
Tssr62998	transcription start site region 62998	559 bp upstream
Tssr62999	transcription start site region 62999	506 bp upstream
Tssr63000	transcription start site region 63000	483 bp upstream
Tssr63001	transcription start site region 63001	467 bp upstream
Tssr63002	transcription start site region 63002	1280 bp downstream