rs244124297 SNP Detail

Summary

• ID
  rs244124297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79213744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAATGAC CTCTGTGAGG
  CTGAGAAGTA GCTGCGGTTG CGTCTGGGAA TAGGTGATTG TCACTGAGAA GACTCAGACC
  TCATGCCTAA CTATCATGGA ATTCCAATAG ATGGAATTAA AGTGAATAAC GCGGGGGCTG
  GTGAGATGGT TCCTCGGTTA AGACCACTGG CTGTTCTTCC AGAGGTCCTG AGTTCAATTC
  Y
  AGCAACCACA TGGTAGCTCT CAACCATCTG TAATGGGATC TAGTGCCCTC TCCTGGCATG
  CAGGCATACA TGCACACAGA GCACTCATAC CATAAATAAA TAAATAAATA GATAGATAGA
  TAGATAGATA GGTAAATAGA TAAATAAATA AATAAATAAA TAAATAAATA AATAAATAGT
  GAATAAATAC ATGGTTGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394675188	MGP_WTSI_15_79159974	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244124297					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394675188	MGP_WTSI_15_79159974	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79213744 () rs orientation: forward

Symbol	Name	Function Class
2310026G15Rik	RIKEN cDNA 2310026G15 gene	830 bp downstream
Cpgi7329	CpG island 7329	1006 bp distal
Pla2g6	phospholipase A2, group VI	1154 bp upstream
Rr404497	regulatory region 404497	1022 bp downstream
Rr505593	regulatory region 505593	1591 bp distal
Rr505594	regulatory region 505594	1803 bp distal
Rr505595	regulatory region 505595	801 bp distal
Rr505596	regulatory region 505596	80 bp distal
Rr505597	regulatory region 505597	40 bp proximal
Rr505598	regulatory region 505598	398 bp proximal
Rr505599	regulatory region 505599	529 bp proximal
Tssr132082	transcription start site region 132082	1950 bp downstream
Tssr135328	transcription start site region 135328	1394 bp upstream
Tssr135329	transcription start site region 135329	1353 bp upstream
Tssr135330	transcription start site region 135330	1283 bp upstream