rs244133600 SNP Detail

Summary

• ID
  rs244133600
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60216495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTAGTCTG AGTCTGCTAA GGAAGCAAGT
  TGCTATGGGA AATGGAAACA GTGATAGCTA GTATACCCCA TGCTCAGAGC CAAACCAGAC
  AGAGTGAGCT GTCCtgtgtg cgtacatgca tgcgtgcgtg cgtgcgtgcg tgcgtgcgtg
  Y
  gtgtgcgtgt gtgtgtgtgt gtgTAactgg cccttcaaat tctttggtca gttagggtcc
  tcacaccaca ggacctatgt ataccctgtt ccctgtgcca gaaaaacaaa caaacaaaca
  aacaaacaaa caaacaaaca aacCTTTCCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325239	CHEV_10_59843464	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244133600					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60216495 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm56993	predicted gene, 56993	1290 bp upstream
Rr368996	regulatory region 368996	493 bp upstream
Rr432129	regulatory region 432129	11 bp distal
Rr432130	regulatory region 432130	300 bp proximal
Tssr93630	transcription start site region 93630	120 bp downstream
Tssr93631	transcription start site region 93631	58 bp downstream
Tssr97724	transcription start site region 97724	484 bp upstream