rs244139218 SNP Detail

Summary

• ID
  rs244139218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:104422107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCAATCTC TATTACACAC
  ACACACACCT CAATGAATCT TTATTTAAAA CTGTCAGTAC CAACCACAGA ACACATTTCC
  ACTTTTGCTA TGCACTGAGC CAGATAGTGA AGATCAAGGT CAAGATGAGA GCTACTAGCC
  CCTGGACCAA TGTTATGGCC TTCCAACCCT TTAAGAATCA TTGAAGTAAT TGTATCCTTC
  Y
  AGGTTCCCAC CTATGCCTTT TTAAGCCATT CAAGGTTTTC CAGAACGGAA GGGAAAAAAT
  ATCAAATGGA CAACAACGTT AACAGAAGTT AGAAATTTAA GAACTGGTAT TTAGAACGTG
  CCTCCTCCTT ATTTACATCC CTCAGGTCCA ATTTCATTTT CTGGTTCTGA CCATAGGAAA
  TTGACTGGGT GTTAATTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389790193	MGP_WTSI_13_105075679	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244139218					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389790193	MGP_WTSI_13_105075679	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:104422107 () rs orientation: forward

Symbol	Name	Function Class
Gm60746	predicted gene, 60746	915 bp downstream
Gm60750	predicted gene, 60750	1501 bp upstream
Rr369763	regulatory region 369763	1212 bp upstream
Rr403946	regulatory region 403946	419 bp upstream
Rr485428	regulatory region 485428	within coordinates
Rr485429	regulatory region 485429	495 bp distal
Rr485430	regulatory region 485430	1011 bp proximal
Rr485431	regulatory region 485431	1606 bp proximal
Tssr120915	transcription start site region 120915	1434 bp upstream
Tssr120916	transcription start site region 120916	1490 bp upstream
Tssr120917	transcription start site region 120917	1519 bp upstream
Tssr120918	transcription start site region 120918	1537 bp upstream
Tssr120919	transcription start site region 120919	1758 bp upstream
Tssr120920	transcription start site region 120920	1853 bp upstream
Tssr120921	transcription start site region 120921	1892 bp upstream
Tssr120922	transcription start site region 120922	1909 bp upstream