rs244140229 SNP Detail

Summary

• ID
  rs244140229
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:29228771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGGGTCT CAGCGCCCGG
  TCCACGGTGC CACGTCCCCT GGGCCGAGCG CTTAGGGCAG GGAGCCGCCT GTGGAAACGA
  AAGCAGGAAG GGGAAAGTCT CCGCGGAGGC AGCGGCCGCC AATCCTATCA GCTCGGACGC
  AGCGGGGCCT TCCCGGCCGG GCTGACTCAT TCCCAGCCGT CTCCTCCGCG AGCCGAGGCC
  R
  CAAGCACGCT GCGCCAACCC GCACCCGCCC CGCTCCTCCT CCTCCTCGCG CGCTCTCGCC
  CGGGGGCTGC CCCGGGAATC TCCACGCGCG CCTCCGCTTC CCCGGAGCCC GCGGCCGCCT
  CCCCCGTCCC GGCCCAGCCC CGCAGAGCGG CCCCGCGGGC GGCGCAGGCG CAGTGGGGCG
  TGCCGGCCTC CGCCCCCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402211693	MGP_WTSI_19_29325861	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244140229					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402211693	MGP_WTSI_19_29325861	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:29228771 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10735	CpG island 10735	within coordinates
Gm41829	predicted gene, 41829	within coordinates
Gm59364	predicted gene, 59364	within coordinates
Jak2	Janus kinase 2	457 bp upstream
Rr546087	regulatory region 546087	44 bp distal
Rr546088	regulatory region 546088	within coordinates
Rr546089	regulatory region 546089	231 bp proximal
Rr546090	regulatory region 546090	580 bp proximal
Rr546091	regulatory region 546091	1081 bp proximal
Tssr155779	transcription start site region 155779	733 bp downstream
Tssr155780	transcription start site region 155780	210 bp upstream
Tssr155781	transcription start site region 155781	377 bp upstream
Tssr155782	transcription start site region 155782	489 bp upstream
Tssr155783	transcription start site region 155783	521 bp upstream
Tssr155784	transcription start site region 155784	929 bp upstream
Tssr155785	transcription start site region 155785	1058 bp upstream
Tssr155786	transcription start site region 155786	1083 bp upstream
Tssr155787	transcription start site region 155787	1183 bp upstream
Tssr158749	transcription start site region 158749	723 bp downstream