rs244146869 SNP Detail

Summary

• ID
  rs244146869
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137178157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              NNNNNNNNNN NNNNNNNNNN
  NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
  NNNNNNNNNN NNNNTAACTT CAGCAGTGGT GGTGACATCA GCAGTGGTGG TGACTTCAGC
  AGTGGTGGTG ACATCAGCCG TTGTGGTGAC ATCAATAGTG GTTGTGACAT CAGCAGTGGT
  G
  GTGACATCAG CAGTGGTGGT GACATCAGCA GTGGTGGTGA CATCACCAGT GGTTGTGATT
  TCAGCAGTGG TTGTGACTTC AGCAGTGGTG GTGACATCAG CAGTGGTGGT GACATCACCA
  GTGGTTGTGA TTTCAGCAGT GGTTGTGACT TCAGCAGTGG TGGTGACATC AGCAGTGGTG
  GTGACATCAC CAGTGGTTGT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ
ss366873411	MGP_WTSI_5_137625405	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ
rs244146869					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366873411	MGP_WTSI_5_137625405	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137178157 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	41 bp upstream
Tssr1678	transcription start site region 1678	1175 bp downstream
Tssr49309	transcription start site region 49309	469 bp upstream
Tssr49310	transcription start site region 49310	829 bp upstream
Tssr49311	transcription start site region 49311	843 bp upstream
Tssr49312	transcription start site region 49312	1223 bp upstream
Tssr49313	transcription start site region 49313	1471 bp upstream
Tssr49314	transcription start site region 49314	1742 bp upstream
Tssr49315	transcription start site region 49315	1758 bp upstream
Tssr53919	transcription start site region 53919	329 bp downstream
Tssr53920	transcription start site region 53920	345 bp downstream
Tssr53921	transcription start site region 53921	500 bp downstream
Tssr53922	transcription start site region 53922	541 bp downstream
Tssr53923	transcription start site region 53923	582 bp downstream
Tssr53924	transcription start site region 53924	596 bp downstream
Tssr53925	transcription start site region 53925	634 bp downstream
Tssr53926	transcription start site region 53926	665 bp downstream
Tssr53927	transcription start site region 53927	814 bp downstream
Tssr53928	transcription start site region 53928	832 bp downstream
Tssr53929	transcription start site region 53929	869 bp downstream
Tssr53930	transcription start site region 53930	934 bp downstream
Tssr53931	transcription start site region 53931	959 bp downstream
Tssr53932	transcription start site region 53932	975 bp downstream
Tssr53933	transcription start site region 53933	1013 bp downstream
Tssr53934	transcription start site region 53934	1045 bp downstream
Tssr53935	transcription start site region 53935	1096 bp downstream
Tssr53936	transcription start site region 53936	1117 bp downstream
Tssr53937	transcription start site region 53937	1207 bp downstream
Tssr53938	transcription start site region 53938	1243 bp downstream
Tssr53939	transcription start site region 53939	1297 bp downstream
Tssr53940	transcription start site region 53940	1473 bp downstream
Tssr53941	transcription start site region 53941	1513 bp downstream
Tssr53942	transcription start site region 53942	1572 bp downstream
Tssr53943	transcription start site region 53943	1737 bp downstream
Tssr53944	transcription start site region 53944	1786 bp downstream
Tssr53945	transcription start site region 53945	1796 bp downstream
Tssr53946	transcription start site region 53946	1817 bp downstream
Tssr53947	transcription start site region 53947	1925 bp downstream