rs244147936 SNP Detail

Summary

• ID
  rs244147936
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97206150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCTTTC TACTTCTTCC
  CCGTTGTTCC CTGAAGGATC TAGTTGTCTT TCACCATGTT ACAGAGTGTA GACCCAAGCC
  ACTGATTTTT CAAAAAGAAA CGTGGAAATG TGGGAGTCAA CCTAACTGTA GGTTCAACTT
  ATGGCCAGAT TTTTTTTTTA AGTGAAGCCC CCGACCCCCG ACTCCCAACC CCCCACCCCC
  C
  GGCCACAACC CAAATCTCAG AGAGCAATAA CAAGGAGGAG CGTAGTAACT CGTATAAACT
  CTGAGAGCTG TGAAGTGTGA TGCTGAAGTT ACTGATTGCC AGGCTGCTGG AATTTATGGA
  AGGTGGGCAT GAGCTGAGGG GGAGGGGGGG CGGGTGAGCT GTTTTCTAGG AATGAAGGGG
  AGTGTGGTAG GATAATGAAC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358934712	MGP_WTSI_3_97102757	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244147936					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358934712	MGP_WTSI_3_97102757	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97206150 () rs orientation: forward

Symbol	Name	Function Class
Bcl9	B cell CLL/lymphoma 9	917 bp upstream
Cpgi13586	CpG island 13586	424 bp distal
Rr69540	regulatory region 69540	1051 bp proximal
Rr78149	regulatory region 78149	within coordinates
Tssr34656	transcription start site region 34656	1001 bp upstream
Tssr34657	transcription start site region 34657	918 bp upstream
Tssr34658	transcription start site region 34658	896 bp upstream