rs244149690 SNP Detail

Summary

• ID
  rs244149690
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:121214902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCGATAA TGATTCTTGC
  ATGAAAATTG ATCGAGGGGC TCTCCACCGC CGCGCGCTCT CGCCTCCCGC TCTCCTGCTC
  CTGCCGGCTG CGCCCCCGCG AGTTCCTCCT CCTCCTCCTC TCCCTCCTCC CCACCCCCTC
  CGTCTGAGTC AGTGGTGGGA CGCCGGGCGG GGAGATAACC AAAAAGGGGG GGGTGCTGGT
  R
  GTGAGGGGGG GAGGGGAGCC TGCCCTCACC AGCGTCCCTA GCCCAAGACT TGTTTGTCGC
  CGCTGCCTCT CCCATTGACG AGGCGAAATC TGCCCCCTCG GTACTTCTTG GCTGTTTGGG
  TATTAATTTT CTCCACCCCC CAGCACCCCT GCCGAGCGCC CCCCTCCTCC TCTCCGCACC
  CCGCCCCTCC TCACCCAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376271973	MGP_WTSI_8_123012063	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244149690					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376271973	MGP_WTSI_8_123012063	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:121214902 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21144	CpG island 21144	within coordinates
Cpgi21145	CpG island 21145	601 bp proximal
Gm51556	predicted gene, 51556	within coordinates
Gm63872	predicted gene, 63872	228 bp downstream
Gse1	genetic suppressor element 1, coiled-coil protein	Intron
Rr401178	regulatory region 401178	959 bp downstream
Rr671531	regulatory region 671531	1974 bp distal
Rr671532	regulatory region 671532	1493 bp distal
Rr671533	regulatory region 671533	1440 bp distal
Rr671534	regulatory region 671534	473 bp distal
Rr671535	regulatory region 671535	within coordinates
Rr671536	regulatory region 671536	93 bp distal
Rr671537	regulatory region 671537	243 bp proximal
Rr671538	regulatory region 671538	1217 bp proximal
Tssr79753	transcription start site region 79753	998 bp downstream
Tssr79754	transcription start site region 79754	514 bp downstream
Tssr79755	transcription start site region 79755	497 bp downstream
Tssr79756	transcription start site region 79756	16 bp upstream
Tssr79757	transcription start site region 79757	43 bp upstream
Tssr79758	transcription start site region 79758	69 bp upstream
Tssr79759	transcription start site region 79759	253 bp upstream
Tssr79760	transcription start site region 79760	328 bp upstream
Tssr79761	transcription start site region 79761	379 bp upstream
Tssr79762	transcription start site region 79762	567 bp upstream
Tssr79763	transcription start site region 79763	589 bp upstream
Tssr79764	transcription start site region 79764	658 bp upstream
Tssr79765	transcription start site region 79765	890 bp upstream
Tssr83193	transcription start site region 83193	1169 bp downstream
Tssr83194	transcription start site region 83194	1265 bp downstream