rs244154778 SNP Detail

Summary

• ID
  rs244154778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:46346711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTACTTT TCTGAAGAAG
  GTTGGAACGG TTTGCTCTGG GCTGGCCATC AGAGGCAGGG AGCTGTGTGG AAATGGTCTG
  ATTTACAGTT ATTTTGGAGG TCCTCTGTCT CAATAAGCCC TAGACATTTT TCTTCTTTGG
  GGGATATTTT GTAATTTCTC CCCTGTGACA GAGAAATCCA AAAAGTATAC ATATTTCCTC
  Y
  TCTCTCTCAA CCTGCTTTCC TCTTAGCTCT CCTTAATGCT GCCATAATTG CTGAGTAACT
  GTATTCAGTT CTCCCAGATC ATCGCTGCCT CTTGGTAGAG TGTTATTGTC TGGCAATTGA
  TAGCCTCTCG GAACGGCAGC ACGAGTGTGT GCCTCATGTT CAGTCAGAGC CTTGCTGGAA
  ACAAACACTG TGGCAGAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325609393	CHEV_18_46373298	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244154778					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:46346711 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10017	CpG island 10017	846 bp distal
Rr352866	regulatory region 352866	within coordinates
Trim36	tripartite motif-containing 36	1037 bp upstream
Tssr153216	transcription start site region 153216	1183 bp upstream
Tssr153217	transcription start site region 153217	1054 bp upstream
Tssr153218	transcription start site region 153218	1010 bp upstream
Tssr153219	transcription start site region 153219	823 bp upstream