rs244155494 SNP Detail

Summary

• ID
  rs244155494
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28980839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAAGCAA TTTCCGCTTC
  GTTGAGCTCC TCACCCACTT CCAGTGCCAC GCCTTCCTGG GTCAATACAC CTCATCTCCC
  TCCCTTCCTC CTTCCTTCTG GAAGGGACAC TTTGCTAACC CTTACGCCCC CGCGCTCGCG
  AGGCTCCTAC CCTTCCTAGC CCGCCACCTG CAGGTCTGGC TCCACCGCCC ATCCTCCCCA
  M
  CCCCAAGGAG CCTGCGATCA CTCTGCGCAC CGAGTACCCC CACTTTCGCT GCGGCCTCCT
  CTATCCCCTG CTCCCGGATC CCCCGCCTGG CCCTCACCGT GGACGTCTAG TTCTCGGCTG
  GCCACCTGGG CCCCGGAGAG GAGCAGCGAA GCTACCAAGG CGAGGAGCGC CCGGCCCCGC
  CGCAGCTCAC AAAGCTGCGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370878675	MGP_WTSI_7_30066433	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244155494					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370878675	MGP_WTSI_7_30066433	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28980839 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18754	CpG island 18754	within coordinates
Gm73729	predicted gene, 73729	529 bp downstream
Rr155861	regulatory region 155861	1762 bp proximal
Rr167412	regulatory region 167412	within coordinates
Spint2	serine protease inhibitor, Kunitz type 2	within coordinates
Tssr2177	transcription start site region 2177	166 bp downstream
Tssr2178	transcription start site region 2178	355 bp downstream
Tssr2179	transcription start site region 2179	407 bp downstream
Tssr2180	transcription start site region 2180	486 bp downstream
Tssr71645	transcription start site region 71645	202 bp downstream
Tssr71646	transcription start site region 71646	500 bp downstream
Tssr71647	transcription start site region 71647	524 bp downstream
Tssr71648	transcription start site region 71648	565 bp downstream
Tssr71649	transcription start site region 71649	619 bp downstream