rs244156281 SNP Detail

Summary

• ID
  rs244156281
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163442685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGCAGCTG AGGTTAAAGG
  CGTGCATCAC GATGCCCAAA TTTCTCAAAT ATTTGAACAT GACTTTTGTA AGAGACATGA
  GCATTCACAC TTATGATTCC AGGACTTCCA AATGTGACAC AGAAGGATTG TGGACTTGAA
  GTCAGCCTAG ATTACATCAA GTTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCACTCAC
  W
  CACACACACA AAGAGAGAGA GAAAGAGAGA GAGAAAGAGA GAGAGGGAGA GAGAACACAG
  AGGGGGTATT CAGGACTCAG TCAGTTGCCG TTGTGACAAC AGAAGCAAGA TGTCGGAGTG
  ATGTGGGGAA GACCATGGAC CAAATAATAC CAGTAGCTCA GTAGCTTCTG CAAGTTGGAA
  AAGAGAACCA GTACCCAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss356411334	MGP_WTSI_2_163426501	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs244156281					SNP	T	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356411334	MGP_WTSI_2_163426501	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163442685 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12638	CpG island 12638	1233 bp proximal
Rr397464	regulatory region 397464	1774 bp upstream
Rr569431	regulatory region 569431	1058 bp distal
Rr569432	regulatory region 569432	1315 bp distal
Rr569433	regulatory region 569433	183 bp proximal
Rr569434	regulatory region 569434	1059 bp proximal
Rr569435	regulatory region 569435	1247 bp proximal
Rr569436	regulatory region 569436	1443 bp proximal
Rr569437	regulatory region 569437	1568 bp proximal
Tssr21475	transcription start site region 21475	1529 bp upstream
Tssr21476	transcription start site region 21476	1566 bp upstream
Ttpal	tocopherol (alpha) transfer protein-like	1549 bp upstream